1. Avoid them, that is buff up to them but not on them.
2. Do the above and lightly polish the paint around them in in-between them by hand.
3. Lightly run you polishing pad and your fine polish over them, light touch, not firm pressure.
I do number 3 for a transportation car.
For something really cool that's an SIV or Special Interest Vehicle, I'll do surgical buffing with a Flex PE 14 and buff around them. I have an article on this somewhere.