Your post doesn't make alot of sense? You paid $2000 for a "show quality" tri-stage paint job & $3500 for a basic stripe kit with JUST CLEAR and you think my $3000 quote for a re-clear is a lot of money? Just because the Viper is more expensive has nothing to do with the price (for this application).
With body repair, I find you more than likely get what you pay for. Have you ever entered your 3-stage cars in a show? I find it difficult to digest that a reputable shop could make a profit on a $2000 paint job? The material cost alone is well over $600.
The first $2,000 job was a local body shop that did work on my 2nd car (Prelude - was in an issue of Super Street back in 2002), and several friends cars. Great work, but on the next car (S2000 - won 2 awards at the 2 shows I entered it in), the body kit wasn't something they wanted to mess with. So I went to another shop with a good recommendation, and they installed the kit, made adjustments as necessary (as the fit on aftermarket parts aren't the greatest), painted the yellow base coat over the entire car, laid the black w/blue pearl on the bottom half of the car, laid the graphics over, applied the yellow again, the pearl, pulled the graphics tape, and sprayed the clear. Then he wet sanded, buffed, and accepted my check for $2,000.
Oh yeah, my motorcycle has a very trick custom paint job. 3 colors, graphics, drop shadows, etc. It has won the only show I've entered it in, and is in the April 2008 Super Street Bike magazine. I paid for the materials on that, $400, and had a friend paint it. So I DO know a little bit regarding what I'm talking about. Regarding profit, I don't know, but I have maintained good relationships with all the previously listed shops, so I'm pretty sure I haven't screwed anyone over.
Regarding your comment, the car does have a lot to do with the price, because I was going to take the car to a body shop that specializes in Vipers and other high-end cars. They know how much we pay for our cars, and they know that most will pay more for paint work from them. I have received cheaper quotes of $1,000 for stripes only, from other local shops, but have yet to pull the trigger on anything, because the solid color is starting to grow on me.
To the OP, if you do decide to get it re-cleared, find a body shop with customer cars you can look at, and make sure they have a lifetime warranty on their work.
Jason